CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1106 rna-evm.model.Chr15.1106 Chr15 32114828 32132287 PREDICTED: Amidase GO:0004040 K01426
gene-evm.TU.Chr15.1107 rna-evm.model.Chr15.1107 Chr15 32134514 32146253 PREDICTED: Amidase GO:0004040 K01426
gene-evm.TU.Chr15.1108 rna-evm.model.Chr15.1108 Chr15 32206334 32230163 PREDICTED: Gelsolin-like protein 2 GO:0051015 K05768
gene-evm.TU.Chr15.1109 rna-evm.model.Chr15.1109 Chr15 32234767 32238503 PREDICTED: trichohyalin GO:0008270 K12026
gene-evm.TU.Chr15.111 rna-evm.model.Chr15.111 Chr15 2207513 2207959 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr15.1110 rna-evm.model.Chr15.1110 Chr15 32246457 32335298 PREDICTED: DNA replication licensing factor mcm2 GO:0003677;GO:0003700;GO:0005524;GO:0005634;GO:0006270;GO:0006355;GO:0008270;GO:0042555;GO:0043565;GO:1905775 K02540
gene-evm.TU.Chr15.1111 rna-evm.model.Chr15.1111 Chr15 32338288 32340015 PREDICTED: Tripartite motif-containing protein 72 GO:0008270 K12026
gene-evm.TU.Chr15.1112 rna-evm.model.Chr15.1112 Chr15 32343505 32347730 PREDICTED: Peptidase M20 domain-containing protein 2 GO:0016787 K26141
gene-evm.TU.Chr15.1113 rna-evm.model.Chr15.1113 Chr15 32348593 32356515 PREDICTED: Alpha-L-fucosidase GO:0004560;GO:0005975;GO:0006004 K01206
gene-evm.TU.Chr15.1114 rna-evm.model.Chr15.1114 Chr15 32359975 32363598 PREDICTED: extensin-like, partial nan K06449

For more detailed data, you can explore the Download section to access the full dataset.