CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1095 rna-evm.model.Chr15.1095 Chr15 31728302 31764488 PREDICTED: Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 GO:0006486;GO:0008375 K09666
gene-evm.TU.Chr15.1096 rna-evm.model.Chr15.1096 Chr15 31771099 31771785 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K14586
gene-evm.TU.Chr15.1097 rna-evm.model.Chr15.1097 Chr15 31771867 31773930 PREDICTED: Protein rolling stone nan K01530
gene-evm.TU.Chr15.11 rna-evm.model.Chr15.11 Chr15 291546 292493 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr15.110 rna-evm.model.Chr15.110 Chr15 2205676 2206444 uncharacterized protein nan K23222
gene-evm.TU.Chr15.1101 rna-evm.model.Chr15.1101 Chr15 31849208 31852341 PREDICTED: FERM domain-containing protein 4A-like nan K24318
gene-evm.TU.Chr15.1102 rna-evm.model.Chr15.1102 Chr15 31860270 31981417 PREDICTED: FERM domain-containing protein 4A GO:0005856 K23970
gene-evm.TU.Chr15.1103 rna-evm.model.Chr15.1103 Chr15 32004946 32039667 PREDICTED: Cytochrome b561 domain-containing protein 1 nan K08371
gene-evm.TU.Chr15.1104 rna-evm.model.Chr15.1104 Chr15 32060135 32080521 PREDICTED: Uncharacterized protein C3orf20 nan K13118
gene-evm.TU.Chr15.1105 rna-evm.model.Chr15.1105 Chr15 32099040 32102397 PREDICTED: cyclic nucleotide gated channel beta 3 nan K14798

For more detailed data, you can explore the Download section to access the full dataset.