CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1082 rna-evm.model.Chr15.1082 Chr15 31346144 31351567 PREDICTED: Sulfotransferase 1A1 GO:0008146 K01014
gene-evm.TU.Chr15.1083 rna-evm.model.Chr15.1083 Chr15 31363844 31370922 PREDICTED: Zinc finger protein 26 GO:0003676 K09228
gene-evm.TU.Chr15.1086 rna-evm.model.Chr15.1086 Chr15 31431339 31449755 PREDICTED: Titin nan K12567
gene-evm.TU.Chr15.1088 rna-evm.model.Chr15.1088 Chr15 31491796 31506052 uncharacterized protein nan K07466
gene-evm.TU.Chr15.1089 rna-evm.model.Chr15.1089 Chr15 31533802 31635788 PREDICTED: Plexin-A4 GO:0005515;GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr15.1090 rna-evm.model.Chr15.1090 Chr15 31669125 31683626 PREDICTED: Solute carrier family 41 member 2 GO:0006812;GO:0008324 K15122
gene-evm.TU.Chr15.1091 rna-evm.model.Chr15.1091 Chr15 31683867 31688546 PREDICTED: Uncharacterized protein C12orf45 nan K26142
gene-evm.TU.Chr15.1092 rna-evm.model.Chr15.1092 Chr15 31689561 31690943 PREDICTED: Autotransporter adhesin BpaC nan nan
gene-evm.TU.Chr15.1093 rna-evm.model.Chr15.1093 Chr15 31691025 31692973 uncharacterized protein nan K07660
gene-evm.TU.Chr15.1094 rna-evm.model.Chr15.1094 Chr15 31710933 31715869 uncharacterized protein GO:0005576;GO:0006030;GO:0008061 nan

For more detailed data, you can explore the Download section to access the full dataset.