CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1072 rna-evm.model.Chr15.1072 Chr15 31162078 31177681 PREDICTED: Protocadherin Fat 4 GO:0005509;GO:0007156;GO:0016020;GO:0098609 K04600
gene-evm.TU.Chr15.1073 rna-evm.model.Chr15.1073 Chr15 31183024 31197877 PREDICTED: Ubiquitin-conjugating enzyme E2 N nan K10580
gene-evm.TU.Chr15.1074 rna-evm.model.Chr15.1074 Chr15 31204716 31206630 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr15.1075 rna-evm.model.Chr15.1075 Chr15 31208990 31210018 PREDICTED: trichohyalin nan K19320
gene-evm.TU.Chr15.1076 rna-evm.model.Chr15.1076 Chr15 31212523 31239586 PREDICTED: Conserved oligomeric Golgi complex subunit 6 GO:0006891;GO:0017119 K20293
gene-evm.TU.Chr15.1077 rna-evm.model.Chr15.1077 Chr15 31245164 31247852 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr15.1078 rna-evm.model.Chr15.1078 Chr15 31252086 31268742 PREDICTED: Protein NEDD1 GO:0005515 K16547
gene-evm.TU.Chr15.1079 rna-evm.model.Chr15.1079 Chr15 31273015 31297076 PREDICTED: Methyl-CpG-binding domain protein 4 GO:0003677;GO:0005634;GO:0006281;GO:0008263 K10801
gene-evm.TU.Chr15.1080 rna-evm.model.Chr15.1080 Chr15 31304132 31333158 PREDICTED: Exodeoxyribonuclease III nan nan
gene-evm.TU.Chr15.1081 rna-evm.model.Chr15.1081 Chr15 31333376 31337395 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.