CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1059 rna-evm.model.Chr15.1059 Chr15 30701832 30706180 PREDICTED: Protein FAM72B nan K10595
gene-evm.TU.Chr15.106 rna-evm.model.Chr15.106 Chr15 2190573 2192166 uncharacterized protein nan K10970
gene-evm.TU.Chr15.1060 rna-evm.model.Chr15.1060 Chr15 30707633 30799203 PREDICTED: Cilia- and flagella-associated protein 54 nan K25553
gene-evm.TU.Chr15.1061 rna-evm.model.Chr15.1061 Chr15 30816965 30819522 PREDICTED: Cyclic GMP-AMP synthase nan K23092
gene-evm.TU.Chr15.1064 rna-evm.model.Chr15.1064 Chr15 30839937 30844107 PREDICTED: EF-hand calcium-binding domain-containing protein 10 nan K10279
gene-evm.TU.Chr15.1065 rna-evm.model.Chr15.1065 Chr15 30853966 30880411 PREDICTED: Zinc finger protein 277 GO:0003676 K11436
gene-evm.TU.Chr15.1067 rna-evm.model.Chr15.1067 Chr15 30900135 30902722 uncharacterized protein nan nan
gene-evm.TU.Chr15.1069 rna-evm.model.Chr15.1069 Chr15 31064261 31083102 PREDICTED: Pleckstrin GO:0035556 K19993
gene-evm.TU.Chr15.1070 rna-evm.model.Chr15.1070.5 Chr15 31089783 31138147 PREDICTED: SRSF protein kinase 1 GO:0004672;GO:0005524;GO:0006468 K08831
gene-evm.TU.Chr15.1071 rna-evm.model.Chr15.1071 Chr15 31140751 31151770 PREDICTED: Kelch-like protein 24 GO:0005515 K10461

For more detailed data, you can explore the Download section to access the full dataset.