CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1043 rna-evm.model.Chr15.1043 Chr15 30180292 30196083 uncharacterized protein nan K09931
gene-evm.TU.Chr15.1044 rna-evm.model.Chr15.1044 Chr15 30227235 30229071 PREDICTED: Serpin B4 GO:0005615 K13963
gene-evm.TU.Chr15.1045 rna-evm.model.Chr15.1045 Chr15 30239061 30251686 PREDICTED: Ankyrin repeat and BTB/POZ domain-containing protein 1 GO:0005515 K10520
gene-evm.TU.Chr15.1047 rna-evm.model.Chr15.1047 Chr15 30293268 30302140 PREDICTED: Protein transport protein Sec61 subunit alpha GO:0015031;GO:0016020 K10956
gene-evm.TU.Chr15.1048 rna-evm.model.Chr15.1048 Chr15 30305028 30319230 PREDICTED: DNA-binding protein P3A2 GO:0003700;GO:0006357 K11831
gene-evm.TU.Chr15.105 rna-evm.model.Chr15.105 Chr15 2188035 2189576 PREDICTED: serine/arginine repetitive matrix protein 2 nan K25171
gene-evm.TU.Chr15.1055 rna-evm.model.Chr15.1055 Chr15 30503026 30530473 PREDICTED: Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) GO:0003824;GO:0005524;GO:0006099;GO:0046872 K01900
gene-evm.TU.Chr15.1056 rna-evm.model.Chr15.1056 Chr15 30530703 30551879 PREDICTED: Cyclin-D-binding Myb-like transcription factor 1 nan K21625
gene-evm.TU.Chr15.1057 rna-evm.model.Chr15.1057 Chr15 30565053 30578882 PREDICTED: Transmembrane protein 243 nan K20491
gene-evm.TU.Chr15.1058 rna-evm.model.Chr15.1058 Chr15 30595618 30626510 PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1 GO:0007165 K07526

For more detailed data, you can explore the Download section to access the full dataset.