CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1033 rna-evm.model.Chr15.1033 Chr15 30001911 30003893 PREDICTED: Protein toll GO:0005515 K18809
gene-evm.TU.Chr15.1034 rna-evm.model.Chr15.1034 Chr15 30013157 30016192 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr15.1035 rna-evm.model.Chr15.1035 Chr15 30023497 30026433 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr15.1036 rna-evm.model.Chr15.1036 Chr15 30029786 30039307 PREDICTED: ADP-ribosylation factor 4 GO:0005525 K07937
gene-evm.TU.Chr15.1037 rna-evm.model.Chr15.1037 Chr15 30043609 30055484 PREDICTED: Succinate-semialdehyde dehydrogenase, mitochondrial GO:0016491;GO:0055114 K00139
gene-evm.TU.Chr15.1039 rna-evm.model.Chr15.1039 Chr15 30064488 30075530 PREDICTED: Interleukin enhancer-binding factor 2 homolog GO:0003723;GO:0005524;GO:0006955;GO:0016740 K13089
gene-evm.TU.Chr15.104 rna-evm.model.Chr15.104 Chr15 2165924 2180667 PREDICTED: Probable ATP-dependent RNA helicase DDX20 GO:0003676;GO:0005524 K13131
gene-evm.TU.Chr15.1040 rna-evm.model.Chr15.1040 Chr15 30084480 30090284 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519
gene-evm.TU.Chr15.1041 rna-evm.model.Chr15.1041.2 Chr15 30091960 30135852 PREDICTED: Dynein regulatory complex subunit 6 GO:0005515 K10279
gene-evm.TU.Chr15.1042 rna-evm.model.Chr15.1042 Chr15 30159909 30178801 uncharacterized protein nan K05167

For more detailed data, you can explore the Download section to access the full dataset.