CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2145 rna-evm.model.Chr1.2145 Chr1 68444694 68445617 PREDICTED: Fibrinogen-like protein A nan K25409
gene-evm.TU.Chr1.2146 rna-evm.model.Chr1.2146 Chr1 68454357 68454884 PREDICTED: Tenascin-R nan K10104
gene-evm.TU.Chr1.2147 rna-evm.model.Chr1.2147 Chr1 68468297 68503346 PREDICTED: UDP-glucose 6-dehydrogenase GO:0003979;GO:0016616;GO:0051287;GO:0055114 K00012
gene-evm.TU.Chr1.2148 rna-evm.model.Chr1.2148 Chr1 68515642 68559474 PREDICTED: SCO-spondin GO:0005576;GO:0006030;GO:0008061 K16857
gene-evm.TU.Chr1.215 rna-evm.model.Chr1.215 Chr1 6628011 6639257 PREDICTED: Glycine receptor subunit alpha-2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.2151 rna-evm.model.Chr1.2151 Chr1 68580605 68592396 uncharacterized protein nan K12026
gene-evm.TU.Chr1.2153 rna-evm.model.Chr1.2153 Chr1 68610670 68647020 PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase GO:0008168 K15335
gene-evm.TU.Chr1.2154 rna-evm.model.Chr1.2154 Chr1 68659145 68667134 PREDICTED: Major facilitator superfamily domain-containing protein 8 GO:0016020;GO:0055085 K12307
gene-evm.TU.Chr1.2155 rna-evm.model.Chr1.2155 Chr1 68668523 68680703 PREDICTED: Maltase A3 GO:0003824;GO:0005975 K14210
gene-evm.TU.Chr1.2157 rna-evm.model.Chr1.2157 Chr1 68697439 68699377 PREDICTED: Allatostatin-A receptor GO:0004930;GO:0007186;GO:0016020 K04194

For more detailed data, you can explore the Download section to access the full dataset.