CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.102 rna-evm.model.Chr15.102 Chr15 2037351 2129287 PREDICTED: Synapsin GO:0007269;GO:0008021 K19941
gene-evm.TU.Chr15.1020 rna-evm.model.Chr15.1020 Chr15 29295050 29296789 PREDICTED: Tripartite motif-containing protein 45 GO:0008270 K12026
gene-evm.TU.Chr15.1022 rna-evm.model.Chr15.1022 Chr15 29306603 29309247 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr15.1023 rna-evm.model.Chr15.1023 Chr15 29318833 29341537 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K19899
gene-evm.TU.Chr15.1024 rna-evm.model.Chr15.1024 Chr15 29351735 29376995 PREDICTED: Haloacid dehalogenase-like hydrolase domain-containing 5 nan K19269
gene-evm.TU.Chr15.1025 rna-evm.model.Chr15.1025 Chr15 29377108 29386852 PREDICTED: protein starmaker-like nan K18637
gene-evm.TU.Chr15.1026 rna-evm.model.Chr15.1026 Chr15 29390725 29392849 PREDICTED: Uncharacterized protein PFB0460c nan K18716
gene-evm.TU.Chr15.1028 rna-evm.model.Chr15.1028 Chr15 29788419 29871159 PREDICTED: Neuroglian GO:0005515 K06756
gene-evm.TU.Chr15.103 rna-evm.model.Chr15.103 Chr15 2137782 2161606 PREDICTED: Twinfilin-1 GO:0003779;GO:0030837 K08870
gene-evm.TU.Chr15.1030 rna-evm.model.Chr15.1030 Chr15 29892756 29954282 PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase GO:0003824;GO:0003873;GO:0005524;GO:0006000;GO:0006003 K19029

For more detailed data, you can explore the Download section to access the full dataset.