CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1010 rna-evm.model.Chr15.1010 Chr15 29062891 29070071 PREDICTED: IWS1-like protein nan K17586
gene-evm.TU.Chr15.1011 rna-evm.model.Chr15.1011 Chr15 29084245 29104186 PREDICTED: Proton myo-inositol cotransporter GO:0016020;GO:0016020;GO:0022857;GO:0055085 K08150
gene-evm.TU.Chr15.1012 rna-evm.model.Chr15.1012 Chr15 29107672 29154188 PREDICTED: General transcription factor 3C polypeptide 6 nan K15203
gene-evm.TU.Chr15.1013 rna-evm.model.Chr15.1013 Chr15 29155817 29160361 PREDICTED: tripartite motif-containing protein 2/3 GO:0008270 K12007
gene-evm.TU.Chr15.1014 rna-evm.model.Chr15.1014 Chr15 29173425 29179165 uncharacterized protein nan K23352
gene-evm.TU.Chr15.1015 rna-evm.model.Chr15.1015 Chr15 29191590 29236625 PREDICTED: Protein FAM107B GO:0005515 K05705
gene-evm.TU.Chr15.1016 rna-evm.model.Chr15.1016 Chr15 29240979 29252980 PREDICTED: Store-operated calcium entry regulator STIMATE nan K26236
gene-evm.TU.Chr15.1017 rna-evm.model.Chr15.1017 Chr15 29280626 29286939 PREDICTED: protein shisa-5-like nan K06788
gene-evm.TU.Chr15.1018 rna-evm.model.Chr15.1018 Chr15 29287317 29289456 uncharacterized protein nan K06786
gene-evm.TU.Chr15.1019 rna-evm.model.Chr15.1019 Chr15 29289729 29290235 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan nan

For more detailed data, you can explore the Download section to access the full dataset.