CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.10 rna-evm.model.Chr15.10 Chr15 283285 285345 uncharacterized protein nan K00361
gene-evm.TU.Chr15.1001 rna-evm.model.Chr15.1001 Chr15 28718013 28723568 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K03138
gene-evm.TU.Chr15.1002 rna-evm.model.Chr15.1002 Chr15 28732190 28816568 PREDICTED: E3 ubiquitin-protein ligase HUWE1 GO:0004842;GO:0008270 K10592
gene-evm.TU.Chr15.1003 rna-evm.model.Chr15.1003 Chr15 28838057 28905062 PREDICTED: Hepatocyte growth factor receptor GO:0004672;GO:0004713;GO:0005515;GO:0005524;GO:0006468 K05099
gene-evm.TU.Chr15.1004 rna-evm.model.Chr15.1004 Chr15 28906530 28968107 PREDICTED: ATP-binding cassette sub-family A member 3 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05643
gene-evm.TU.Chr15.1005 rna-evm.model.Chr15.1005 Chr15 28980661 28981494 PREDICTED: Protein CLN8 GO:0016020 K12360
gene-evm.TU.Chr15.1006 rna-evm.model.Chr15.1006 Chr15 28986405 28998098 PREDICTED: V-type proton ATPase subunit S1 GO:1902600;GO:0033180;GO:0046933;GO:0046961 K03662
gene-evm.TU.Chr15.1007 rna-evm.model.Chr15.1007 Chr15 29001645 29008131 PREDICTED: Histone-lysine N-methyltransferase SUV39H2 GO:0005515;GO:0005634;GO:0008270;GO:0018024;GO:0034968 K11419
gene-evm.TU.Chr15.1008 rna-evm.model.Chr15.1008 Chr15 29015760 29037080 PREDICTED: Pseudouridylate synthase 7 homolog GO:0001522;GO:0003723;GO:0009451;GO:0009982 K06176
gene-evm.TU.Chr15.101 rna-evm.model.Chr15.101 Chr15 2050086 2052811 PREDICTED: serine/threonine-protein phosphatase 5 [EC:3.1.3.16] nan K04423

For more detailed data, you can explore the Download section to access the full dataset.