CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.99 rna-evm.model.Chr14.99 Chr14 3357975 3358410 uncharacterized protein nan nan
gene-evm.TU.Chr14.990 rna-evm.model.Chr14.990 Chr14 31667252 31677692 PREDICTED: mediator of RNA polymerase II transcription subunit 25 nan K08844
gene-evm.TU.Chr14.991 rna-evm.model.Chr14.991 Chr14 31753662 31780351 PREDICTED: Prostaglandin G/H synthase 2 GO:0001516;GO:0004666;GO:0006954;GO:0008217;GO:0019371 K11987
gene-evm.TU.Chr14.992 rna-evm.model.Chr14.992 Chr14 31809689 31818063 PREDICTED: Transmembrane channel-like protein 5 nan K19438
gene-evm.TU.Chr14.993 rna-evm.model.Chr14.993 Chr14 31842001 31869314 PREDICTED: Cytosolic phospholipase A2 GO:0004620;GO:0009395 K16342
gene-evm.TU.Chr14.994 rna-evm.model.Chr14.994 Chr14 31873066 31888914 PREDICTED: Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 GO:0008168;GO:0032259 K14590
gene-evm.TU.Chr14.995 rna-evm.model.Chr14.995 Chr14 31891980 31962660 PREDICTED: Tudor domain-containing protein 5 nan K18407
gene-evm.TU.Chr14.996 rna-evm.model.Chr14.996 Chr14 31967813 31985229 PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 GO:0003723;GO:0019843 K14560
gene-evm.TU.Chr14.997_evm.TU.Chr14.998 rna-evm.model.Chr14.997_evm.model.Chr14.998 Chr14 31990525 32090606 PREDICTED: Neurogenic locus notch homolog protein 1 GO:0005509;GO:0005515;GO:0007219;GO:0007275;GO:0016020;GO:0030154 K02599
gene-evm.TU.Chr15.1 rna-evm.model.Chr15.1 Chr15 20272 22410 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.