CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.975 rna-evm.model.Chr14.975 Chr14 31203908 31204644 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr14.976 rna-evm.model.Chr14.976 Chr14 31211977 31214741 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16599
gene-evm.TU.Chr14.977 rna-evm.model.Chr14.977 Chr14 31215891 31218504 PREDICTED: phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] nan K27244
gene-evm.TU.Chr14.979 rna-evm.model.Chr14.979 Chr14 31225510 31228477 PREDICTED: Putative protein FAM47C nan K04981
gene-evm.TU.Chr14.98 rna-evm.model.Chr14.98 Chr14 3314950 3351069 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 20 GO:0004843;GO:0008270;GO:0016579;GO:0004843 K11848
gene-evm.TU.Chr14.980 rna-evm.model.Chr14.980 Chr14 31241592 31247614 PREDICTED: mannose receptor, C type nan K06243
gene-evm.TU.Chr14.982 rna-evm.model.Chr14.982 Chr14 31300284 31301015 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr14.986 rna-evm.model.Chr14.986 Chr14 31474874 31476739 PREDICTED: Probable ATP-dependent DNA helicase RecS GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr14.987 rna-evm.model.Chr14.987 Chr14 31556796 31600078 uncharacterized protein nan nan
gene-evm.TU.Chr14.988 rna-evm.model.Chr14.988 Chr14 31600345 31636017 PREDICTED: Protein STRUBBELIG-RECEPTOR FAMILY 5 GO:0004672;GO:0005524;GO:0006468 K04733

For more detailed data, you can explore the Download section to access the full dataset.