CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.960 rna-evm.model.Chr14.960 Chr14 30633894 30634091 PREDICTED: Selenoprotein F nan nan
gene-evm.TU.Chr14.962 rna-evm.model.Chr14.962 Chr14 30744382 30776864 uncharacterized protein nan K04367
gene-evm.TU.Chr14.964 rna-evm.model.Chr14.964 Chr14 30825996 30826674 uncharacterized protein nan nan
gene-evm.TU.Chr14.965 rna-evm.model.Chr14.965 Chr14 30827516 30828136 uncharacterized protein nan K10804
gene-evm.TU.Chr14.966 rna-evm.model.Chr14.966 Chr14 30829422 30832411 PREDICTED: Putative enzymatic polyprotein GO:0003677;GO:0015074 K21037
gene-evm.TU.Chr14.968 rna-evm.model.Chr14.968 Chr14 30881765 30883453 uncharacterized protein nan nan
gene-evm.TU.Chr14.969 rna-evm.model.Chr14.969 Chr14 30886111 30887981 PREDICTED: Probable ATP-dependent DNA helicase RecS GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr14.97 rna-evm.model.Chr14.97 Chr14 3278610 3284788 PREDICTED: tripartite motif-containing protein 71 [EC:2.3.2.27] nan K10642
gene-evm.TU.Chr14.971 rna-evm.model.Chr14.971 Chr14 31011652 31054281 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0004672;GO:0005524;GO:0006468 K08844
gene-evm.TU.Chr14.973 rna-evm.model.Chr14.973 Chr14 31120582 31144833 PREDICTED: NLR family CARD domain-containing protein 4 nan K18547

For more detailed data, you can explore the Download section to access the full dataset.