CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.951 rna-evm.model.Chr14.951 Chr14 30375252 30391262 PREDICTED: 28S ribosomal protein S2, mitochondrial GO:0003735;GO:0005840;GO:0006412;GO:0015935 K02967
gene-evm.TU.Chr14.952 rna-evm.model.Chr14.952 Chr14 30397262 30412252 PREDICTED: 60S ribosomal protein L5 GO:0003735;GO:0005840;GO:0006412;GO:0008097 K02932
gene-evm.TU.Chr14.953 rna-evm.model.Chr14.953 Chr14 30418718 30450257 PREDICTED: Coiled-coil domain-containing protein 18 nan K06675
gene-evm.TU.Chr14.954 rna-evm.model.Chr14.954 Chr14 30463681 30468510 PREDICTED: Endo-1,4-beta-xylanase B nan K06817
gene-evm.TU.Chr14.955 rna-evm.model.Chr14.955 Chr14 30482513 30525862 PREDICTED: Aggrecan core protein nan K06468
gene-evm.TU.Chr14.956 rna-evm.model.Chr14.956 Chr14 30529296 30554879 PREDICTED: Signal transducer and transcription activator GO:0003677;GO:0003700;GO:0005634;GO:0006355;GO:0007165 K11224
gene-evm.TU.Chr14.957 rna-evm.model.Chr14.957 Chr14 30559737 30577370 PREDICTED: Signal transducer and activator of transcription 5A GO:0003677;GO:0003700;GO:0005634;GO:0006355;GO:0007165 K11224
gene-evm.TU.Chr14.958 rna-evm.model.Chr14.958 Chr14 30588954 30615461 PREDICTED: Signal transducer and activator of transcription 3 GO:0003700;GO:0005634;GO:0006355;GO:0007165 K11224
gene-evm.TU.Chr14.959 rna-evm.model.Chr14.959 Chr14 30615497 30620306 PREDICTED: Selenoprotein F nan nan
gene-evm.TU.Chr14.96 rna-evm.model.Chr14.96 Chr14 3138862 3254358 PREDICTED: Insoluble matrix shell protein 5 GO:0005509 K13448

For more detailed data, you can explore the Download section to access the full dataset.