CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.939 rna-evm.model.Chr14.939 Chr14 29896964 29917377 PREDICTED: Serine/threonine-protein phosphatase 2A activator GO:0019211 K17605
gene-evm.TU.Chr14.940 rna-evm.model.Chr14.940 Chr14 30036745 30069729 PREDICTED: LIM domain transcription factor LMO4-A nan K24099
gene-evm.TU.Chr14.941 rna-evm.model.Chr14.941 Chr14 30076590 30155786 uncharacterized protein nan nan
gene-evm.TU.Chr14.942 rna-evm.model.Chr14.942 Chr14 30179957 30218185 uncharacterized protein nan K16220
gene-evm.TU.Chr14.944 rna-evm.model.Chr14.944 Chr14 30249835 30278917 PREDICTED: Cytosolic phospholipase A2 GO:0004620;GO:0009395 K16342
gene-evm.TU.Chr14.946 rna-evm.model.Chr14.946 Chr14 30297989 30298919 PREDICTED: Cytosolic phospholipase A2 nan K16342
gene-evm.TU.Chr14.947 rna-evm.model.Chr14.947 Chr14 30298929 30312651 PREDICTED: Cytosolic phospholipase A2 GO:0004620;GO:0009395 K16342
gene-evm.TU.Chr14.948 rna-evm.model.Chr14.948 Chr14 30332044 30344658 PREDICTED: N-acetylglucosamine-1-phosphotransferase subunits alpha/beta GO:0016772 K08239
gene-evm.TU.Chr14.949 rna-evm.model.Chr14.949 Chr14 30349859 30363644 PREDICTED: Cytosolic phospholipase A2 GO:0004620;GO:0009395 K16342
gene-evm.TU.Chr14.95 rna-evm.model.Chr14.95 Chr14 3113161 3113335 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.