CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.929 rna-evm.model.Chr14.929 Chr14 29629751 29631478 PREDICTED: Gag-Pol polyprotein nan K14019
gene-evm.TU.Chr14.93 rna-evm.model.Chr14.93 Chr14 3066847 3070357 PREDICTED: Polcalcin Phl p 7 GO:0005509 K13448
gene-evm.TU.Chr14.930 rna-evm.model.Chr14.930 Chr14 29632697 29633320 uncharacterized protein nan K10804
gene-evm.TU.Chr14.931 rna-evm.model.Chr14.931 Chr14 29689570 29692833 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr14.932 rna-evm.model.Chr14.932 Chr14 29701613 29703838 uncharacterized protein nan K26153
gene-evm.TU.Chr14.933 rna-evm.model.Chr14.933 Chr14 29722245 29741631 PREDICTED: Serine O-succinyltransferase nan K00641
gene-evm.TU.Chr14.935 rna-evm.model.Chr14.935 Chr14 29773156 29773617 uncharacterized protein nan nan
gene-evm.TU.Chr14.936 rna-evm.model.Chr14.936 Chr14 29777754 29784315 PREDICTED: L-proline trans-4-hydroxylase nan K21615
gene-evm.TU.Chr14.937 rna-evm.model.Chr14.937 Chr14 29786457 29853348 PREDICTED: Spectrin alpha chain GO:0005509;GO:0005515 K06114
gene-evm.TU.Chr14.938 rna-evm.model.Chr14.938 Chr14 29881063 29893083 PREDICTED: Carnitine O-acetyltransferase GO:0016746 K00624

For more detailed data, you can explore the Download section to access the full dataset.