CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.911 rna-evm.model.Chr14.911 Chr14 28578818 28592513 PREDICTED: Glutamate--cysteine ligase regulatory subunit GO:0006750;GO:0035226 K11205
gene-evm.TU.Chr14.913 rna-evm.model.Chr14.913 Chr14 28632390 28645374 PREDICTED: Rab-like protein 6 GO:0003924;GO:0005525 K07874
gene-evm.TU.Chr14.914 rna-evm.model.Chr14.914 Chr14 28651500 28659484 PREDICTED: Coiled-coil domain-containing protein 151 GO:0003341;GO:0005929;GO:0070286 K23733
gene-evm.TU.Chr14.916 rna-evm.model.Chr14.916 Chr14 28694121 28718175 PREDICTED: Serine/threonine-protein kinase TNNI3K GO:0004672;GO:0005515;GO:0005524;GO:0006468 K17535
gene-evm.TU.Chr14.917 rna-evm.model.Chr14.917 Chr14 28726957 28728894 PREDICTED: Dopamine N-acetyltransferase nan K20838
gene-evm.TU.Chr14.918 rna-evm.model.Chr14.918 Chr14 28729998 28731731 uncharacterized protein nan K03789
gene-evm.TU.Chr14.919 rna-evm.model.Chr14.919 Chr14 28754431 28763699 PREDICTED: ankyrin repeat domain-containing protein 50 nan nan
gene-evm.TU.Chr14.920 rna-evm.model.Chr14.920 Chr14 28776170 28779924 PREDICTED: Cytochrome P450 1A2 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr14.925 rna-evm.model.Chr14.925 Chr14 28906055 28907228 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr14.928 rna-evm.model.Chr14.928 Chr14 29627873 29628553 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763

For more detailed data, you can explore the Download section to access the full dataset.