CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.213 rna-evm.model.Chr1.213 Chr1 6557297 6565131 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K17890
gene-evm.TU.Chr1.2130 rna-evm.model.Chr1.2130 Chr1 68160982 68173828 PREDICTED: Obscurin nan K17531
gene-evm.TU.Chr1.2131 rna-evm.model.Chr1.2131 Chr1 68165890 68170705 uncharacterized protein nan K07483
gene-evm.TU.Chr1.2132 rna-evm.model.Chr1.2132 Chr1 68170848 68171183 PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial nan nan
gene-evm.TU.Chr1.2133 rna-evm.model.Chr1.2133 Chr1 68182534 68186747 PREDICTED: Pikachurin GO:0005515;GO:0005525;GO:0008270 K06753
gene-evm.TU.Chr1.2135 rna-evm.model.Chr1.2135 Chr1 68195274 68223612 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 GO:0003676;GO:0005524;GO:0005634;GO:0006338;GO:0016589;GO:0016818;GO:0016887;GO:0031491;GO:0006338 K11727
gene-evm.TU.Chr1.2136 rna-evm.model.Chr1.2136 Chr1 68230541 68232534 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr1.2141 rna-evm.model.Chr1.2141 Chr1 68291699 68311022 PREDICTED: Cyclic nucleotide-binding domain-containing protein 2 nan K07376
gene-evm.TU.Chr1.2142_evm.TU.Chr1.2143 rna-evm.model.Chr1.2142_evm.model.Chr1.2143 Chr1 68317157 68330803 PREDICTED: Dehydrogenase/reductase SDR family member on chromosome X nan K11170
gene-evm.TU.Chr1.2144 rna-evm.model.Chr1.2144 Chr1 68334679 68336169 PREDICTED: Cytochrome P450 2U1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07418

For more detailed data, you can explore the Download section to access the full dataset.