CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.898 rna-evm.model.Chr14.898 Chr14 28290613 28304137 PREDICTED: Solute carrier family 22 member 6-A GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr14.899 rna-evm.model.Chr14.899 Chr14 28307889 28354298 PREDICTED: Kinesin-like protein KIF14 GO:0003777;GO:0005515;GO:0005524;GO:0007018;GO:0008017 K17915
gene-evm.TU.Chr14.9 rna-evm.model.Chr14.9 Chr14 243152 252086 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr14.90 rna-evm.model.Chr14.90 Chr14 3022642 3061540 PREDICTED: Bifunctional hemolysin/adenylate cyclase GO:0005509 K01406
gene-evm.TU.Chr14.904 rna-evm.model.Chr14.904 Chr14 28410445 28412643 PREDICTED: Transcription intermediary factor 1-beta GO:0008270 K12026
gene-evm.TU.Chr14.905 rna-evm.model.Chr14.905 Chr14 28425662 28428627 PREDICTED: Transcription intermediary factor 1-beta GO:0008270 K12026
gene-evm.TU.Chr14.906 rna-evm.model.Chr14.906 Chr14 28450719 28452706 PREDICTED: codanin-1 nan K10395
gene-evm.TU.Chr14.908 rna-evm.model.Chr14.908 Chr14 28490728 28491384 PREDICTED: Dopamine N-acetyltransferase nan K03789
gene-evm.TU.Chr14.909 rna-evm.model.Chr14.909 Chr14 28493972 28566038 PREDICTED: Dopamine N-acetyltransferase nan K00669
gene-evm.TU.Chr14.910 rna-evm.model.Chr14.910 Chr14 28570297 28572653 PREDICTED: Dopamine N-acetyltransferase nan K03789

For more detailed data, you can explore the Download section to access the full dataset.