CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.871 rna-evm.model.Chr14.871 Chr14 26855516 26856218 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr14.872 rna-evm.model.Chr14.872 Chr14 26856587 26857135 PREDICTED: Protein GVQW3 nan K07499
gene-evm.TU.Chr14.873 rna-evm.model.Chr14.873 Chr14 26966724 26967605 uncharacterized protein nan K22525
gene-evm.TU.Chr14.874 rna-evm.model.Chr14.874 Chr14 26969068 26969493 PREDICTED: THAP domain-containing protein 11 nan K17487
gene-evm.TU.Chr14.876 rna-evm.model.Chr14.876 Chr14 27082960 27083853 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K12035
gene-evm.TU.Chr14.877 rna-evm.model.Chr14.877 Chr14 27166046 27172697 PREDICTED: Prothoracicostatic peptides nan K00712
gene-evm.TU.Chr14.878 rna-evm.model.Chr14.878 Chr14 27172843 27200520 PREDICTED: Bromodomain-containing protein 2 GO:0005515 K08871
gene-evm.TU.Chr14.880 rna-evm.model.Chr14.880 Chr14 27222893 27232431 PREDICTED: Notch 2 nan K11244
gene-evm.TU.Chr14.881 rna-evm.model.Chr14.881 Chr14 27288714 27304941 PREDICTED: Surfeit locus protein 4 GO:0016020 K20369
gene-evm.TU.Chr14.882 rna-evm.model.Chr14.882 Chr14 27311149 27342323 uncharacterized protein nan K24465

For more detailed data, you can explore the Download section to access the full dataset.