CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.846 rna-evm.model.Chr14.846 Chr14 25990688 25996447 PREDICTED: Achacin GO:0016491;GO:0055114 K03334
gene-evm.TU.Chr14.847 rna-evm.model.Chr14.847 Chr14 25997029 25998108 PREDICTED: Aplysianin-A nan nan
gene-evm.TU.Chr14.849 rna-evm.model.Chr14.849 Chr14 26023138 26026349 PREDICTED: Senecionine N-oxygenase GO:0004499;GO:0050660;GO:0050661;GO:0055114 K18277
gene-evm.TU.Chr14.85 rna-evm.model.Chr14.85 Chr14 2775613 2792549 PREDICTED: Bifunctional hemolysin/adenylate cyclase GO:0005509 K01406
gene-evm.TU.Chr14.850 rna-evm.model.Chr14.850 Chr14 26133288 26172857 PREDICTED: 70 kDa neurofilament protein nan K18585
gene-evm.TU.Chr14.851 rna-evm.model.Chr14.851 Chr14 26182726 26220599 PREDICTED: Mannan endo-1,4-beta-mannosidase nan K01218
gene-evm.TU.Chr14.852 rna-evm.model.Chr14.852 Chr14 26221862 26225313 PREDICTED: MORN repeat-containing protein 5 nan K19755
gene-evm.TU.Chr14.853 rna-evm.model.Chr14.853 Chr14 26246847 26272433 PREDICTED: Helicase SKI2W GO:0003676;GO:0005524 K12599
gene-evm.TU.Chr14.854 rna-evm.model.Chr14.854 Chr14 26279370 26292075 PREDICTED: basic proline-rich protein nan K19475
gene-evm.TU.Chr14.855 rna-evm.model.Chr14.855 Chr14 26304623 26313675 PREDICTED: Notch 2 nan K11244

For more detailed data, you can explore the Download section to access the full dataset.