CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.834 rna-evm.model.Chr14.834 Chr14 25653167 25654664 PREDICTED: sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68] nan K09168
gene-evm.TU.Chr14.835 rna-evm.model.Chr14.835 Chr14 25655496 25656571 PREDICTED: retinitis pigmentosa 1 nan K09168
gene-evm.TU.Chr14.836 rna-evm.model.Chr14.836 Chr14 25657014 25657469 PREDICTED: nuclear pore complex protein Nup62 nan K17256
gene-evm.TU.Chr14.838 rna-evm.model.Chr14.838 Chr14 25702209 25724073 PREDICTED: Geranylgeranyl transferase type-2 subunit beta GO:0003824 K05956
gene-evm.TU.Chr14.84 rna-evm.model.Chr14.84 Chr14 2762410 2765364 PREDICTED: Mitochondrial-processing peptidase subunit alpha GO:0006627 K01412
gene-evm.TU.Chr14.840 rna-evm.model.Chr14.840 Chr14 25736115 25744001 PREDICTED: Aplysianin-A GO:0016491;GO:0055114 K03334
gene-evm.TU.Chr14.841 rna-evm.model.Chr14.841 Chr14 25744817 25751103 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr14.842 rna-evm.model.Chr14.842 Chr14 25755889 25759130 PREDICTED: Senecionine N-oxygenase GO:0004499;GO:0050660;GO:0050661;GO:0055114 K18277
gene-evm.TU.Chr14.843 rna-evm.model.Chr14.843 Chr14 25841257 25929069 PREDICTED: 70 kDa neurofilament protein nan K18585
gene-evm.TU.Chr14.845 rna-evm.model.Chr14.845 Chr14 25969322 25977898 PREDICTED: Geranylgeranyl transferase type-2 subunit beta GO:0003824 K05956

For more detailed data, you can explore the Download section to access the full dataset.