CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.812 rna-evm.model.Chr14.812 Chr14 25116717 25137468 PREDICTED: Dipeptidyl peptidase 2 GO:0006508;GO:0008236 K01276
gene-evm.TU.Chr14.813 rna-evm.model.Chr14.813 Chr14 25146830 25152765 PREDICTED: Carbohydrate sulfotransferase 3 GO:0008146 K01020
gene-evm.TU.Chr14.814 rna-evm.model.Chr14.814 Chr14 25213852 25230917 uncharacterized protein nan nan
gene-evm.TU.Chr14.815 rna-evm.model.Chr14.815 Chr14 25282515 25290065 PREDICTED: Replicase polyprotein 1ab nan K10184
gene-evm.TU.Chr14.816 rna-evm.model.Chr14.816 Chr14 25306444 25307202 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K10816
gene-evm.TU.Chr14.817 rna-evm.model.Chr14.817 Chr14 25317891 25319066 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr14.818 rna-evm.model.Chr14.818 Chr14 25324437 25375384 PREDICTED: Zinc finger CCCH-type with G patch domain-containing protein GO:0003676;GO:0046872 K13103
gene-evm.TU.Chr14.819 rna-evm.model.Chr14.819 Chr14 25376184 25398159 PREDICTED: WD repeat-containing protein 46 GO:0005515 K14768
gene-evm.TU.Chr14.82 rna-evm.model.Chr14.82 Chr14 2719307 2744768 PREDICTED: Sec1 family domain-containing protein 2 GO:0006904;GO:0016192 K15292
gene-evm.TU.Chr14.820 rna-evm.model.Chr14.820 Chr14 25405165 25435383 PREDICTED: Histone-lysine N-methyltransferase EHMT1 GO:0005515;GO:0005634;GO:0008270;GO:0018024;GO:0034968 K11420

For more detailed data, you can explore the Download section to access the full dataset.