CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.821 rna-evm.model.Chr14.821.1 Chr14 25465637 25483278 PREDICTED: Nuclear receptor subfamily 5 group A member 2 GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08027
gene-evm.TU.Chr14.822 rna-evm.model.Chr14.822 Chr14 25495728 25502438 PREDICTED: E3 ubiquitin-protein ligase PPP1R11 GO:0004865;GO:0032515 K17553
gene-evm.TU.Chr14.823 rna-evm.model.Chr14.823 Chr14 25510897 25523493 PREDICTED: Radial spoke head protein 6 homolog A GO:0001534;GO:0060271;GO:0060294 K19756
gene-evm.TU.Chr14.825 rna-evm.model.Chr14.825 Chr14 25536741 25540797 PREDICTED: Replicase polyprotein 1a nan K19547
gene-evm.TU.Chr14.826 rna-evm.model.Chr14.826 Chr14 25553724 25558397 uncharacterized protein nan K10059
gene-evm.TU.Chr14.827 rna-evm.model.Chr14.827 Chr14 25568886 25569845 PREDICTED: C-type lectin domain family 4 member F nan K18283
gene-evm.TU.Chr14.828 rna-evm.model.Chr14.828 Chr14 25574782 25576172 PREDICTED: Proteoglycan 4 nan K04361
gene-evm.TU.Chr14.830 rna-evm.model.Chr14.830 Chr14 25618622 25622765 PREDICTED: Proteoglycan 4 nan K09168
gene-evm.TU.Chr14.831 rna-evm.model.Chr14.831 Chr14 25626013 25626414 uncharacterized protein nan K24637
gene-evm.TU.Chr14.832 rna-evm.model.Chr14.832 Chr14 25626466 25626819 PREDICTED: Zinc finger BED domain-containing protein 1 nan K24637

For more detailed data, you can explore the Download section to access the full dataset.