CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.802 rna-evm.model.Chr14.802 Chr14 24943141 24951781 PREDICTED: C-type lectin domain family 6 member A nan K10058
gene-evm.TU.Chr14.803 rna-evm.model.Chr14.803 Chr14 24972069 24994710 uncharacterized protein nan K26458
gene-evm.TU.Chr14.804 rna-evm.model.Chr14.804 Chr14 24996348 25001349 PREDICTED: Dipeptidyl peptidase 2 GO:0006508;GO:0008236 K01276
gene-evm.TU.Chr14.805 rna-evm.model.Chr14.805 Chr14 25001704 25008022 PREDICTED: IQ motif and SEC7 domain-containing protein nan nan
gene-evm.TU.Chr14.806 rna-evm.model.Chr14.806 Chr14 25010515 25013145 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr14.807 rna-evm.model.Chr14.807 Chr14 25013192 25018703 PREDICTED: leucine-rich repeat-containing protein 59-like nan K12811
gene-evm.TU.Chr14.809 rna-evm.model.Chr14.809 Chr14 25053641 25062071 PREDICTED: A-kinase anchor protein 5 GO:0003723 K02391
gene-evm.TU.Chr14.81 rna-evm.model.Chr14.81 Chr14 2683164 2713484 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr14.810 rna-evm.model.Chr14.810 Chr14 25077239 25083541 PREDICTED: nicotinic acetylcholine receptor beta-4 nan K03667
gene-evm.TU.Chr14.811 rna-evm.model.Chr14.811 Chr14 25093807 25095421 PREDICTED: Alpha-1A adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K22919

For more detailed data, you can explore the Download section to access the full dataset.