CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.791 rna-evm.model.Chr14.791 Chr14 24586752 24658702 PREDICTED: Coiled-coil domain-containing protein 180 nan K06240
gene-evm.TU.Chr14.792 rna-evm.model.Chr14.792 Chr14 24667859 24678738 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.793 rna-evm.model.Chr14.793 Chr14 24689900 24691006 PREDICTED: aminopeptidase N [EC:3.4.11.2] nan K11547
gene-evm.TU.Chr14.794 rna-evm.model.Chr14.794 Chr14 24723287 24744576 PREDICTED: Cytochrome P450 1A2 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07410
gene-evm.TU.Chr14.795 rna-evm.model.Chr14.795 Chr14 24769222 24788776 PREDICTED: E3 SUMO-protein ligase ZNF451 GO:0003676 K25176
gene-evm.TU.Chr14.796 rna-evm.model.Chr14.796 Chr14 24809556 24835373 PREDICTED: Gem-associated protein 4 GO:0000387;GO:0006364;GO:0032797 K13132
gene-evm.TU.Chr14.797 rna-evm.model.Chr14.797 Chr14 24844570 24845704 uncharacterized protein nan nan
gene-evm.TU.Chr14.798_evm.TU.Chr14.799 rna-evm.model.Chr14.798_evm.model.Chr14.799 Chr14 24846432 24893940 PREDICTED: Ribonuclease 3 GO:0004525;GO:0006396 K03685
gene-evm.TU.Chr14.80 rna-evm.model.Chr14.80 Chr14 2628133 2671288 PREDICTED: tripartite motif-containing protein 71 [EC:2.3.2.27] nan K10642
gene-evm.TU.Chr14.800 rna-evm.model.Chr14.800 Chr14 24899198 24931993 PREDICTED: Lactose-binding lectin l-2 nan K10058

For more detailed data, you can explore the Download section to access the full dataset.