CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2120 rna-evm.model.Chr1.2120 Chr1 67948985 67954980 uncharacterized protein nan K01837
gene-evm.TU.Chr1.2121 rna-evm.model.Chr1.2121 Chr1 67974134 67993566 PREDICTED: KRAB domain-containing zinc finger protein nan K14996
gene-evm.TU.Chr1.2122 rna-evm.model.Chr1.2122 Chr1 67993574 67993864 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr1.2123 rna-evm.model.Chr1.2123 Chr1 67993915 67994874 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr1.2124 rna-evm.model.Chr1.2124 Chr1 67994929 67995621 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr1.2125 rna-evm.model.Chr1.2125 Chr1 68018712 68022591 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr1.2126 rna-evm.model.Chr1.2126 Chr1 68025550 68055979 PREDICTED: Nuclear pore complex protein Nup54 GO:0005643 K14308
gene-evm.TU.Chr1.2127 rna-evm.model.Chr1.2127 Chr1 68078861 68097957 PREDICTED: Ubiquitin-protein ligase E3A GO:0004842 K10587
gene-evm.TU.Chr1.2128 rna-evm.model.Chr1.2128 Chr1 68091612 68114168 PREDICTED: NF-X1-type zinc finger protein NFXL1 GO:0003700;GO:0005634;GO:0006355;GO:0008270 K15683
gene-evm.TU.Chr1.2129 rna-evm.model.Chr1.2129 Chr1 68140574 68141635 uncharacterized protein nan K18960

For more detailed data, you can explore the Download section to access the full dataset.