CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.781 rna-evm.model.Chr14.781 Chr14 24335768 24345328 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.782 rna-evm.model.Chr14.782 Chr14 24380820 24405663 PREDICTED: Protein crumbs GO:0005509 K16681
gene-evm.TU.Chr14.783 rna-evm.model.Chr14.783 Chr14 24454547 24480487 PREDICTED: Sulfhydryl oxidase 2 GO:0016971;GO:0016972;GO:0045454;GO:0055114 K10758
gene-evm.TU.Chr14.784 rna-evm.model.Chr14.784 Chr14 24491435 24492487 uncharacterized protein nan nan
gene-evm.TU.Chr14.785 rna-evm.model.Chr14.785 Chr14 24503883 24511067 PREDICTED: Serine/threonine-protein kinase Nek7 GO:0004672;GO:0005524;GO:0006468 K20876
gene-evm.TU.Chr14.786 rna-evm.model.Chr14.786 Chr14 24516815 24529733 uncharacterized protein nan K06846
gene-evm.TU.Chr14.787 rna-evm.model.Chr14.787 Chr14 24532363 24538328 PREDICTED: Torsin-1B GO:0005524;GO:0005635;GO:0005783 K22990
gene-evm.TU.Chr14.788 rna-evm.model.Chr14.788 Chr14 24544914 24547335 PREDICTED: Tetratricopeptide repeat protein 28 GO:0005515 K24936
gene-evm.TU.Chr14.789 rna-evm.model.Chr14.789 Chr14 24547343 24552723 PREDICTED: Tetratricopeptide repeat protein 28 GO:0005515 K24936
gene-evm.TU.Chr14.790 rna-evm.model.Chr14.790 Chr14 24564809 24584388 PREDICTED: Tetratricopeptide repeat protein 28 GO:0005515 K24936

For more detailed data, you can explore the Download section to access the full dataset.