CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.771 rna-evm.model.Chr14.771 Chr14 23989597 23993158 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr14.772 rna-evm.model.Chr14.772 Chr14 23995456 24005414 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr14.773 rna-evm.model.Chr14.773 Chr14 24008179 24016551 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr14.774 rna-evm.model.Chr14.774 Chr14 24040572 24106605 PREDICTED: Protein crumbs GO:0005509 K02599
gene-evm.TU.Chr14.775 rna-evm.model.Chr14.775 Chr14 24143181 24166876 PREDICTED: Sulfhydryl oxidase 2 GO:0016971;GO:0016972;GO:0045454;GO:0055114 K10758
gene-evm.TU.Chr14.776 rna-evm.model.Chr14.776 Chr14 24186066 24192153 PREDICTED: Serine/threonine-protein kinase Nek7 GO:0004672;GO:0005524;GO:0006468 K20876
gene-evm.TU.Chr14.777 rna-evm.model.Chr14.777 Chr14 24205985 24208529 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K06846
gene-evm.TU.Chr14.778 rna-evm.model.Chr14.778 Chr14 24228783 24233955 PREDICTED: Torsin-1B GO:0005524;GO:0005635;GO:0005783 K22990
gene-evm.TU.Chr14.779 rna-evm.model.Chr14.779 Chr14 24243023 24258801 PREDICTED: Tetratricopeptide repeat protein 28 GO:0005515 K24936
gene-evm.TU.Chr14.780 rna-evm.model.Chr14.780 Chr14 24261370 24312157 PREDICTED: Coiled-coil domain-containing protein 180 nan K10405

For more detailed data, you can explore the Download section to access the full dataset.