CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.760 rna-evm.model.Chr14.760 Chr14 23772924 23774812 PREDICTED: trichohyalin-like nan K03529
gene-evm.TU.Chr14.761 rna-evm.model.Chr14.761 Chr14 23776300 23782126 PREDICTED: viral A-type inclusion protein nan K06675
gene-evm.TU.Chr14.762 rna-evm.model.Chr14.762 Chr14 23785223 23831146 PREDICTED: Stomatin-2 GO:0016020 K17286
gene-evm.TU.Chr14.763 rna-evm.model.Chr14.763 Chr14 23872726 23873295 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K18742
gene-evm.TU.Chr14.765 rna-evm.model.Chr14.765 Chr14 23869946 23910551 PREDICTED: Mechanosensory protein 2 GO:0016020 K17286
gene-evm.TU.Chr14.766 rna-evm.model.Chr14.766.1 Chr14 23920363 23929390 uncharacterized protein nan K04707
gene-evm.TU.Chr14.767 rna-evm.model.Chr14.767 Chr14 23936120 23937932 uncharacterized protein nan nan
gene-evm.TU.Chr14.769 rna-evm.model.Chr14.769 Chr14 23964341 23981572 PREDICTED: Kelch-like protein 9 GO:0005515 K10447
gene-evm.TU.Chr14.77 rna-evm.model.Chr14.77 Chr14 2512210 2586448 PREDICTED: Ecotropic viral integration site 5 protein homolog GO:0005096;GO:0043087 K20242
gene-evm.TU.Chr14.770 rna-evm.model.Chr14.770 Chr14 23983634 23985352 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714

For more detailed data, you can explore the Download section to access the full dataset.