CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.747 rna-evm.model.Chr14.747 Chr14 23132308 23135618 PREDICTED: importin-4 nan K11703
gene-evm.TU.Chr14.748 rna-evm.model.Chr14.748 Chr14 23136416 23158139 PREDICTED: tRNA methyltransferase 10 homolog B nan K15445
gene-evm.TU.Chr14.749 rna-evm.model.Chr14.749 Chr14 23164501 23221693 PREDICTED: Small RNA 2'-O-methyltransferase GO:0001510;GO:0008171;GO:0008173 K20798
gene-evm.TU.Chr14.750 rna-evm.model.Chr14.750 Chr14 23231070 23279734 PREDICTED: Phosphatidylinositol 4-phosphate 5-kinase-like protein 1 GO:0016307;GO:0046488 K13712
gene-evm.TU.Chr14.752_evm.TU.Chr14.751 rna-evm.model.Chr14.752_evm.model.Chr14.751 Chr14 23297892 23322525 PREDICTED: WD repeat-containing protein 47 GO:0005515 K24746
gene-evm.TU.Chr14.754 rna-evm.model.Chr14.754 Chr14 23426824 23532838 PREDICTED: Discoidin domain-containing receptor 2 GO:0004672;GO:0004713;GO:0005524;GO:0006468 K05125
gene-evm.TU.Chr14.755 rna-evm.model.Chr14.755 Chr14 23546384 23702295 PREDICTED: Discoidin domain-containing receptor 2 GO:0004672;GO:0004713;GO:0005524;GO:0006468 K05125
gene-evm.TU.Chr14.756 rna-evm.model.Chr14.756 Chr14 23722030 23723869 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr14.759 rna-evm.model.Chr14.759 Chr14 23765629 23770321 PREDICTED: ELKS/RAB6-interacting/CAST family member 1 nan K06267
gene-evm.TU.Chr14.76 rna-evm.model.Chr14.76 Chr14 2492553 2504257 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08187

For more detailed data, you can explore the Download section to access the full dataset.