CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.712 rna-evm.model.Chr14.712 Chr14 21605974 21617047 PREDICTED: Collagen alpha-1(XII) chain GO:0005576;GO:0006030;GO:0008061 K06238
gene-evm.TU.Chr14.713 rna-evm.model.Chr14.713 Chr14 21621330 21623992 PREDICTED: Alpha-(1,6)-fucosyltransferase nan K00717
gene-evm.TU.Chr14.714 rna-evm.model.Chr14.714 Chr14 21633708 21640305 PREDICTED: Alpha-(1,6)-fucosyltransferase nan K00717
gene-evm.TU.Chr14.715 rna-evm.model.Chr14.715 Chr14 21655609 21681864 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr14.716 rna-evm.model.Chr14.716 Chr14 21682384 21684092 PREDICTED: ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] nan K20261
gene-evm.TU.Chr14.717 rna-evm.model.Chr14.717 Chr14 21686589 21688894 uncharacterized protein nan nan
gene-evm.TU.Chr14.718 rna-evm.model.Chr14.718 Chr14 21697404 21703553 PREDICTED: Cell division cycle protein 20 homolog GO:0005515;GO:0010997;GO:0097027;GO:1904668 K03363
gene-evm.TU.Chr14.719 rna-evm.model.Chr14.719 Chr14 21705948 21708771 uncharacterized protein nan nan
gene-evm.TU.Chr14.720 rna-evm.model.Chr14.720 Chr14 21762577 21764528 PREDICTED: CDGSH iron-sulfur domain-containing protein 3, mitochondrial GO:0043231;GO:0051537 K23886
gene-evm.TU.Chr14.721 rna-evm.model.Chr14.721 Chr14 21768200 21777328 PREDICTED: Protein FAM166B nan nan

For more detailed data, you can explore the Download section to access the full dataset.