CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.692 rna-evm.model.Chr14.692 Chr14 21204231 21209568 PREDICTED: Vesicle-trafficking protein SEC22b GO:0016020;GO:0016192 K08517
gene-evm.TU.Chr14.693 rna-evm.model.Chr14.693 Chr14 21251800 21253063 uncharacterized protein nan K06846
gene-evm.TU.Chr14.694 rna-evm.model.Chr14.694 Chr14 21271525 21276199 uncharacterized protein nan nan
gene-evm.TU.Chr14.695 rna-evm.model.Chr14.695 Chr14 21290711 21322460 PREDICTED: Adenylate kinase isoenzyme 5 GO:0005524;GO:0006139;GO:0019205 K00939
gene-evm.TU.Chr14.696 rna-evm.model.Chr14.696 Chr14 21324237 21333527 PREDICTED: GPI-anchor transamidase GO:0003923;GO:0006508;GO:0008233;GO:0016255;GO:0042765 K05290
gene-evm.TU.Chr14.697_evm.TU.Chr14.698 rna-evm.model.Chr14.697_evm.model.Chr14.698 Chr14 21344554 21399142 PREDICTED: Furin GO:0004252;GO:0006508 K01349
gene-evm.TU.Chr14.699 rna-evm.model.Chr14.699 Chr14 21404995 21408972 PREDICTED: Zinc transporter SLC39A7 GO:0016020;GO:0030001;GO:0046873;GO:0055085 K14713
gene-evm.TU.Chr14.70 rna-evm.model.Chr14.70 Chr14 2329131 2330104 PREDICTED: kinesin light chain nan K10642
gene-evm.TU.Chr14.700 rna-evm.model.Chr14.700 Chr14 21411299 21428339 PREDICTED: Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 GO:0003676;GO:0004386;GO:0005524 K12813
gene-evm.TU.Chr14.701 rna-evm.model.Chr14.701.4 Chr14 21435005 21468578 PREDICTED: Dynamin-1 GO:0003924;GO:0005525 K01528

For more detailed data, you can explore the Download section to access the full dataset.