CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2104 rna-evm.model.Chr1.2104 Chr1 67058911 67099519 PREDICTED: tripartite motif-containing protein 2/3 nan K14028
gene-evm.TU.Chr1.2105 rna-evm.model.Chr1.2105 Chr1 67172781 67173561 uncharacterized protein nan K16633
gene-evm.TU.Chr1.2106 rna-evm.model.Chr1.2106 Chr1 67221510 67223742 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr1.2107 rna-evm.model.Chr1.2107 Chr1 67228477 67238242 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K16590
gene-evm.TU.Chr1.2111 rna-evm.model.Chr1.2111 Chr1 67588977 67598893 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr1.2113 rna-evm.model.Chr1.2113 Chr1 67646032 67698974 PREDICTED: Coadhesin (Fragment) GO:0005515 K16857
gene-evm.TU.Chr1.2114 rna-evm.model.Chr1.2114 Chr1 67752244 67782033 PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase GO:0008168 K15335
gene-evm.TU.Chr1.2116 rna-evm.model.Chr1.2116 Chr1 67813599 67844851 PREDICTED: UDP-glucose 6-dehydrogenase GO:0003979;GO:0016616;GO:0051287;GO:0055114 K00012
gene-evm.TU.Chr1.2117 rna-evm.model.Chr1.2117 Chr1 67849713 67850702 PREDICTED: Techylectin-5B nan K25409
gene-evm.TU.Chr1.2119 rna-evm.model.Chr1.2119 Chr1 67890768 67938660 PREDICTED: Protocadherin Fat 4 GO:0005509;GO:0007156;GO:0016020;GO:0098609 K16669

For more detailed data, you can explore the Download section to access the full dataset.