CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.662 rna-evm.model.Chr14.662 Chr14 20501122 20539179 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0016020 K13912
gene-evm.TU.Chr14.663 rna-evm.model.Chr14.663 Chr14 20592596 20599472 PREDICTED: 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] nan K24190
gene-evm.TU.Chr14.664 rna-evm.model.Chr14.664 Chr14 20610994 20614897 PREDICTED: Putative peptidyl-prolyl cis-trans isomerase dodo GO:0003755;GO:0005515 K09578
gene-evm.TU.Chr14.665 rna-evm.model.Chr14.665 Chr14 20624688 20665685 PREDICTED: Ral guanine nucleotide dissociation stimulator-like 1 GO:0005085;GO:0007165;GO:0007264;GO:0005085 K17635
gene-evm.TU.Chr14.667 rna-evm.model.Chr14.667 Chr14 20783813 20786651 PREDICTED: NLR family CARD domain-containing protein 3 nan K07579
gene-evm.TU.Chr14.668 rna-evm.model.Chr14.668 Chr14 20787216 20787479 PREDICTED: tudor domain-containing protein 1/4/6/7 nan K09766
gene-evm.TU.Chr14.669 rna-evm.model.Chr14.669 Chr14 20840694 20870589 PREDICTED: Rab GTPase-activating protein 1 GO:0005096;GO:0005515;GO:0043547 K20284
gene-evm.TU.Chr14.67 rna-evm.model.Chr14.67 Chr14 2166440 2167408 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.670 rna-evm.model.Chr14.670 Chr14 20878420 20904944 PREDICTED: Tubulin alpha-1 chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr14.671 rna-evm.model.Chr14.671 Chr14 20912184 20922209 PREDICTED: Sideroflexin-2 GO:0006811;GO:0015075;GO:0016020;GO:0055085 K23501

For more detailed data, you can explore the Download section to access the full dataset.