CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.672 rna-evm.model.Chr14.672 Chr14 20929547 20935683 PREDICTED: ADP-ribosylation factor-like protein 3 GO:0005525 K07944
gene-evm.TU.Chr14.674 rna-evm.model.Chr14.674 Chr14 20946267 20957496 PREDICTED: Uveal autoantigen with coiled-coil domains and ankyrin repeats GO:0005515 K10338
gene-evm.TU.Chr14.675 rna-evm.model.Chr14.675 Chr14 20981756 20984620 uncharacterized protein nan nan
gene-evm.TU.Chr14.676 rna-evm.model.Chr14.676 Chr14 20997815 21003443 PREDICTED: Palmitoyltransferase ZDHHC23 nan K18932
gene-evm.TU.Chr14.677 rna-evm.model.Chr14.677 Chr14 21004747 21006809 PREDICTED: Staphylocoagulase nan K12797
gene-evm.TU.Chr14.678 rna-evm.model.Chr14.678 Chr14 21007584 21027480 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K03985
gene-evm.TU.Chr14.679 rna-evm.model.Chr14.679 Chr14 21027527 21034620 PREDICTED: mucin-5AC nan K15245
gene-evm.TU.Chr14.68 rna-evm.model.Chr14.68 Chr14 2243193 2243678 PREDICTED: Cysteine-rich, acidic integral membrane protein nan K13006
gene-evm.TU.Chr14.680 rna-evm.model.Chr14.680 Chr14 21045958 21075948 PREDICTED: serine/arginine repetitive matrix protein 1 nan nan
gene-evm.TU.Chr14.681 rna-evm.model.Chr14.681 Chr14 21076485 21084094 PREDICTED: Coiled-coil domain-containing protein 105 nan K18628

For more detailed data, you can explore the Download section to access the full dataset.