CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.652 rna-evm.model.Chr14.652 Chr14 20286987 20293348 uncharacterized protein nan K03979
gene-evm.TU.Chr14.654 rna-evm.model.Chr14.654 Chr14 20324930 20325703 PREDICTED: Lactose-binding lectin l-2 nan K10066
gene-evm.TU.Chr14.655 rna-evm.model.Chr14.655 Chr14 20328357 20329085 PREDICTED: C-type lectin superfamily 17 member A nan K10066
gene-evm.TU.Chr14.656 rna-evm.model.Chr14.656.1 Chr14 20331782 20334302 uncharacterized protein nan K13344
gene-evm.TU.Chr14.657 rna-evm.model.Chr14.657 Chr14 20340587 20361071 PREDICTED: Manganese-transporting ATPase 13A1 nan K14950
gene-evm.TU.Chr14.658 rna-evm.model.Chr14.658 Chr14 20367854 20369014 PREDICTED: Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr14.659 rna-evm.model.Chr14.659 Chr14 20375999 20440084 PREDICTED: Guanine nucleotide-releasing factor 2 GO:0005085;GO:0007264 K06277
gene-evm.TU.Chr14.66 rna-evm.model.Chr14.66 Chr14 2123256 2137417 PREDICTED: Photoreceptor-specific nuclear receptor GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08546
gene-evm.TU.Chr14.660 rna-evm.model.Chr14.660 Chr14 20435385 20473985 PREDICTED: Protein ROP GO:0006904;GO:0016192 K15292
gene-evm.TU.Chr14.661 rna-evm.model.Chr14.661 Chr14 20478485 20498781 PREDICTED: Gelsolin-like protein 1 GO:0051015 K05768

For more detailed data, you can explore the Download section to access the full dataset.