CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.638 rna-evm.model.Chr14.638 Chr14 19915633 19923145 PREDICTED: 40S ribosomal protein S18 GO:0003723;GO:0003735;GO:0005840;GO:0006412 K02964
gene-evm.TU.Chr14.639 rna-evm.model.Chr14.639 Chr14 19923642 19945917 PREDICTED: Vacuolar protein sorting-associated protein 52 homolog nan K20298
gene-evm.TU.Chr14.64 rna-evm.model.Chr14.64 Chr14 2035949 2040343 PREDICTED: Ubiquitin-related modifier 1 GO:0005737;GO:0034227 K12161
gene-evm.TU.Chr14.643 rna-evm.model.Chr14.643 Chr14 20008845 20025350 PREDICTED: Regulator of G-protein signaling 3 GO:0005085;GO:0005515;GO:0035023 K07524
gene-evm.TU.Chr14.645 rna-evm.model.Chr14.645 Chr14 20085153 20145371 PREDICTED: 14 kDa phosphohistidine phosphatase nan K01112
gene-evm.TU.Chr14.647 rna-evm.model.Chr14.647 Chr14 20193269 20230221 PREDICTED: LOW QUALITY PROTEIN: midasin-like nan K17633
gene-evm.TU.Chr14.648 rna-evm.model.Chr14.648 Chr14 20239686 20241005 PREDICTED: Protein LIAT1 nan K00289
gene-evm.TU.Chr14.649 rna-evm.model.Chr14.649.1 Chr14 20242843 20257962 PREDICTED: Hephaestin-like protein GO:0005507;GO:0016491;GO:0055114 K14735
gene-evm.TU.Chr14.65 rna-evm.model.Chr14.65 Chr14 2081650 2109288 PREDICTED: Paired mesoderm homeobox protein 1 GO:0003677 K09329
gene-evm.TU.Chr14.650 rna-evm.model.Chr14.650 Chr14 20260075 20263935 PREDICTED: Golgi-associated plant pathogenesis-related protein 1 nan K24835

For more detailed data, you can explore the Download section to access the full dataset.