CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.611 rna-evm.model.Chr14.611 Chr14 19358764 19367785 PREDICTED: Negative elongation factor B GO:0005634;GO:0045892 K15180
gene-evm.TU.Chr14.612 rna-evm.model.Chr14.612 Chr14 19374262 19390633 PREDICTED: Deoxyhypusine synthase GO:0003712;GO:0006357;GO:0008612;GO:0016592 K00809
gene-evm.TU.Chr14.614 rna-evm.model.Chr14.614 Chr14 19441459 19465505 uncharacterized protein nan K14972
gene-evm.TU.Chr14.615 rna-evm.model.Chr14.615 Chr14 19479937 19495628 uncharacterized protein nan K24940
gene-evm.TU.Chr14.616 rna-evm.model.Chr14.616 Chr14 19499010 19526788 PREDICTED: Lactose-binding lectin l-2 nan K06721
gene-evm.TU.Chr14.617 rna-evm.model.Chr14.617 Chr14 19529925 19539460 PREDICTED: Membrane primary amine oxidase GO:0005507;GO:0008131;GO:0009308;GO:0048038;GO:0055114 K11182
gene-evm.TU.Chr14.618 rna-evm.model.Chr14.618 Chr14 19548030 19549837 PREDICTED: Probable palmitoyltransferase ZDHHC24 nan K18932
gene-evm.TU.Chr14.619 rna-evm.model.Chr14.619 Chr14 19562760 19566401 PREDICTED: E3 ubiquitin-protein ligase DZIP3 GO:0000209;GO:0003723;GO:0061630 K10642
gene-evm.TU.Chr14.621 rna-evm.model.Chr14.621 Chr14 19590443 19605337 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K12646
gene-evm.TU.Chr14.622 rna-evm.model.Chr14.622 Chr14 19613648 19636843 PREDICTED: Proprotein convertase subtilisin/kexin type 6 GO:0004252;GO:0006508 K08671

For more detailed data, you can explore the Download section to access the full dataset.