CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.598 rna-evm.model.Chr14.598 Chr14 19181162 19182122 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr14.599 rna-evm.model.Chr14.599 Chr14 19183573 19184543 PREDICTED: Ryncolin-4 nan K10104
gene-evm.TU.Chr14.600 rna-evm.model.Chr14.600 Chr14 19186134 19194011 PREDICTED: Sodium/glucose cotransporter 4 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr14.601 rna-evm.model.Chr14.601 Chr14 19205758 19243699 PREDICTED: Fibropellin-1 GO:0005509 K20994
gene-evm.TU.Chr14.602 rna-evm.model.Chr14.602 Chr14 19248973 19275269 PREDICTED: Band 7 protein AGAP004871 GO:0016020 K17286
gene-evm.TU.Chr14.603 rna-evm.model.Chr14.603 Chr14 19278704 19284671 uncharacterized protein nan K03529
gene-evm.TU.Chr14.604 rna-evm.model.Chr14.604 Chr14 19286206 19287528 PREDICTED: trichohyalin-like nan K03529
gene-evm.TU.Chr14.605 rna-evm.model.Chr14.605 Chr14 19291753 19297080 PREDICTED: LOW QUALITY PROTEIN: myosin-6 nan K06267
gene-evm.TU.Chr14.61 rna-evm.model.Chr14.61 Chr14 1850646 1879411 PREDICTED: Band 7 protein AAEL010189 nan K17286
gene-evm.TU.Chr14.610 rna-evm.model.Chr14.610 Chr14 19339702 19351940 PREDICTED: Metalloprotease mig-17 GO:0004222;GO:0006508 K08621

For more detailed data, you can explore the Download section to access the full dataset.