CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.585 rna-evm.model.Chr14.585 Chr14 18905576 18909980 PREDICTED: potassium channel subfamily T member 1 nan K04946
gene-evm.TU.Chr14.586 rna-evm.model.Chr14.586 Chr14 18932677 18934290 PREDICTED: Jerky protein homolog-like GO:0003676 K22594
gene-evm.TU.Chr14.587 rna-evm.model.Chr14.587 Chr14 18962545 18963385 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.589 rna-evm.model.Chr14.589 Chr14 19018428 19018832 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K13146
gene-evm.TU.Chr14.591 rna-evm.model.Chr14.591 Chr14 19078155 19084559 PREDICTED: Mechanosensory protein 2 GO:0016020 K17286
gene-evm.TU.Chr14.592 rna-evm.model.Chr14.592.3 Chr14 19090639 19111467 uncharacterized protein nan K14855
gene-evm.TU.Chr14.594 rna-evm.model.Chr14.594 Chr14 19140846 19159557 PREDICTED: Kelch-like protein 9 GO:0005515 K10447
gene-evm.TU.Chr14.595 rna-evm.model.Chr14.595 Chr14 19162866 19164587 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr14.596 rna-evm.model.Chr14.596 Chr14 19170036 19172869 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr14.597 rna-evm.model.Chr14.597 Chr14 19176575 19177315 PREDICTED: Carbohydrate sulfotransferase 3 GO:0008146 K01022

For more detailed data, you can explore the Download section to access the full dataset.