CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.570 rna-evm.model.Chr14.570 Chr14 18348349 18354597 PREDICTED: L-proline trans-4-hydroxylase nan K21615
gene-evm.TU.Chr14.571 rna-evm.model.Chr14.571 Chr14 18375117 18377579 PREDICTED: oral-facial-digital syndrome 1 protein nan K20394
gene-evm.TU.Chr14.572 rna-evm.model.Chr14.572 Chr14 18381074 18401088 PREDICTED: Protein odr-4 homolog nan K15498
gene-evm.TU.Chr14.573 rna-evm.model.Chr14.573 Chr14 18409055 18411946 PREDICTED: S-antigen protein GO:0000226;GO:0005516;GO:0005874;GO:0008017 K22604
gene-evm.TU.Chr14.574 rna-evm.model.Chr14.574 Chr14 18411203 18413054 uncharacterized protein nan nan
gene-evm.TU.Chr14.575 rna-evm.model.Chr14.575 Chr14 18561082 18579658 uncharacterized protein nan K24639
gene-evm.TU.Chr14.576 rna-evm.model.Chr14.576 Chr14 18579984 18580745 uncharacterized protein nan K05220
gene-evm.TU.Chr14.577 rna-evm.model.Chr14.577 Chr14 18581994 18584325 PREDICTED: neuronal cell adhesion molecule nan nan
gene-evm.TU.Chr14.583 rna-evm.model.Chr14.583 Chr14 18852158 18855209 PREDICTED: calreticulin nan nan
gene-evm.TU.Chr14.584 rna-evm.model.Chr14.584 Chr14 18855263 18905552 PREDICTED: Potassium channel subfamily T member 2 nan K04946

For more detailed data, you can explore the Download section to access the full dataset.