CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2095 rna-evm.model.Chr1.2095 Chr1 66515190 66522610 PREDICTED: titin [EC:2.7.11.1] nan K04423
gene-evm.TU.Chr1.2096 rna-evm.model.Chr1.2096 Chr1 66632721 66646072 PREDICTED: Transcription factor AP-4 GO:0046983 K09108
gene-evm.TU.Chr1.2097 rna-evm.model.Chr1.2097 Chr1 66659103 66674785 PREDICTED: Putative polypeptide N-acetylgalactosaminyltransferase 10 nan K00710
gene-evm.TU.Chr1.2098 rna-evm.model.Chr1.2098 Chr1 66685693 66706382 PREDICTED: Integrin-linked protein kinase GO:0004672;GO:0005515;GO:0005524;GO:0006468 K06272
gene-evm.TU.Chr1.2099 rna-evm.model.Chr1.2099 Chr1 66712168 66725256 PREDICTED: Ribosomal RNA-processing protein 8 GO:0005730;GO:0008168 K14850
gene-evm.TU.Chr1.21 rna-evm.model.Chr1.21 Chr1 757134 758837 PREDICTED: Heavy metal-binding protein HIP nan K23284
gene-evm.TU.Chr1.210 rna-evm.model.Chr1.210 Chr1 6514847 6520511 PREDICTED: laminin, beta 1 nan K22804
gene-evm.TU.Chr1.2100 rna-evm.model.Chr1.2100 Chr1 66751480 66752331 uncharacterized protein nan K16633
gene-evm.TU.Chr1.2101 rna-evm.model.Chr1.2101 Chr1 66838413 66838637 PREDICTED: Xaa-Pro aminopeptidase 2 [EC:3.4.11.9] nan nan
gene-evm.TU.Chr1.2103 rna-evm.model.Chr1.2103 Chr1 66918156 66920562 PREDICTED: histone-lysine N-methyltransferase SUV420H [EC:2.1.1.43] nan nan

For more detailed data, you can explore the Download section to access the full dataset.