CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.541 rna-evm.model.Chr14.541 Chr14 17490222 17503306 PREDICTED: Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase GO:0004571;GO:0005509;GO:0016020 K23741
gene-evm.TU.Chr14.543 rna-evm.model.Chr14.543 Chr14 17526971 17574620 PREDICTED: Usherin GO:0005515 K16353
gene-evm.TU.Chr14.545 rna-evm.model.Chr14.545 Chr14 17587224 17620046 PREDICTED: Probable ATP-dependent RNA helicase DDX31 GO:0003676;GO:0005524 K14806
gene-evm.TU.Chr14.546 rna-evm.model.Chr14.546 Chr14 17633957 17659702 PREDICTED: Rhomboid-related protein 3 GO:0004252;GO:0016020 K02857
gene-evm.TU.Chr14.547 rna-evm.model.Chr14.547 Chr14 17668712 17669895 PREDICTED: Dehydrogenase/reductase SDR family member 1 nan K11163
gene-evm.TU.Chr14.549 rna-evm.model.Chr14.549 Chr14 17691090 17721831 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020 K04307
gene-evm.TU.Chr14.55 rna-evm.model.Chr14.55 Chr14 1776751 1781133 uncharacterized protein nan K02109
gene-evm.TU.Chr14.550 rna-evm.model.Chr14.550 Chr14 17767546 17832134 PREDICTED: Nucleoporin NUP188 homolog GO:0017056 K14311
gene-evm.TU.Chr14.552 rna-evm.model.Chr14.552 Chr14 17858909 17860186 PREDICTED: cholecystokinin A receptor GO:0004930;GO:0007186;GO:0016020 K04139
gene-evm.TU.Chr14.553 rna-evm.model.Chr14.553 Chr14 17872040 17873880 PREDICTED: D(2) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K04139

For more detailed data, you can explore the Download section to access the full dataset.