CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.554 rna-evm.model.Chr14.554 Chr14 17875833 17958252 PREDICTED: Sushi, nidogen and EGF-like domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr14.555 rna-evm.model.Chr14.555 Chr14 17972864 17995128 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 6 GO:0004222;GO:0006508 K08632
gene-evm.TU.Chr14.557 rna-evm.model.Chr14.557 Chr14 18018254 18020555 PREDICTED: Glucose dehydrogenase [FAD, quinone] GO:0016614;GO:0050660;GO:0055114 K00115
gene-evm.TU.Chr14.558 rna-evm.model.Chr14.558 Chr14 18026034 18043170 PREDICTED: Ubiquitin carboxyl-terminal hydrolase isozyme L5 GO:0004843;GO:0006511 K05610
gene-evm.TU.Chr14.561 rna-evm.model.Chr14.561 Chr14 18125742 18127287 uncharacterized protein nan K04501
gene-evm.TU.Chr14.563 rna-evm.model.Chr14.563 Chr14 18143784 18157845 PREDICTED: Box C/D snoRNA protein 1 nan K23309
gene-evm.TU.Chr14.564 rna-evm.model.Chr14.564 Chr14 18181030 18185392 uncharacterized protein nan K08239
gene-evm.TU.Chr14.565 rna-evm.model.Chr14.565 Chr14 18237952 18239996 PREDICTED: ankyrin repeat domain-containing protein 50 nan K23470
gene-evm.TU.Chr14.567 rna-evm.model.Chr14.567 Chr14 18264731 18267182 PREDICTED: Transposable element Tcb1 nan K02186
gene-evm.TU.Chr14.57 rna-evm.model.Chr14.57 Chr14 1819035 1819355 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.