CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.529 rna-evm.model.Chr14.529 Chr14 17282328 17292293 PREDICTED: Sodium-coupled monocarboxylate transporter 2 GO:0016020;GO:0022857;GO:0055085 K14388
gene-evm.TU.Chr14.530 rna-evm.model.Chr14.530 Chr14 17300273 17315433 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14388
gene-evm.TU.Chr14.531 rna-evm.model.Chr14.531 Chr14 17321139 17329364 PREDICTED: Dehydrogenase/reductase SDR family member 4 nan K00034
gene-evm.TU.Chr14.532 rna-evm.model.Chr14.532 Chr14 17330030 17352590 PREDICTED: Dehydrogenase/reductase SDR family member 4 nan K00034
gene-evm.TU.Chr14.533 rna-evm.model.Chr14.533 Chr14 17357577 17375447 uncharacterized protein nan nan
gene-evm.TU.Chr14.534 rna-evm.model.Chr14.534 Chr14 17382447 17391147 uncharacterized protein nan nan
gene-evm.TU.Chr14.535 rna-evm.model.Chr14.535 Chr14 17395146 17397994 PREDICTED: Transient receptor potential cation channel subfamily V member 6 GO:0005216;GO:0005515;GO:0006811;GO:0016020;GO:0016020;GO:0055085 K04975
gene-evm.TU.Chr14.536 rna-evm.model.Chr14.536 Chr14 17410181 17423931 PREDICTED: CUB domain-containing protein 2 GO:0005515 K08670
gene-evm.TU.Chr14.538_evm.TU.Chr14.539 rna-evm.model.Chr14.538_evm.model.Chr14.539 Chr14 17429841 17467226 PREDICTED: Transcriptional protein SWT1 GO:0005515 K07158
gene-evm.TU.Chr14.54 rna-evm.model.Chr14.54 Chr14 1741398 1751268 PREDICTED: Neural cell adhesion molecule 1 nan K24496

For more detailed data, you can explore the Download section to access the full dataset.