CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.517 rna-evm.model.Chr14.517 Chr14 16812461 16815368 uncharacterized protein nan K04399
gene-evm.TU.Chr14.518 rna-evm.model.Chr14.518 Chr14 16849961 16850484 PREDICTED: Transposable element Tcb2 transposase, partial nan nan
gene-evm.TU.Chr14.519 rna-evm.model.Chr14.519 Chr14 16872443 16884009 PREDICTED: Centrosome-associated protein 350 GO:0005813;GO:0008017;GO:0034453 K16768
gene-evm.TU.Chr14.520 rna-evm.model.Chr14.520 Chr14 16914130 16923886 PREDICTED: calpain-1 [EC:3.4.22.52] nan K02184
gene-evm.TU.Chr14.522 rna-evm.model.Chr14.522 Chr14 17002662 17021458 PREDICTED: Queuine tRNA-ribosyltransferase accessory subunit 2 GO:0006400;GO:0016763 K15407
gene-evm.TU.Chr14.523 rna-evm.model.Chr14.523 Chr14 17023925 17038985 PREDICTED: Negative elongation factor E GO:0003676;GO:0006355;GO:0032021 K15182
gene-evm.TU.Chr14.525 rna-evm.model.Chr14.525 Chr14 17150130 17161108 PREDICTED: CUB and sushi domain-containing protein GO:0005576;GO:0006030;GO:0008061 nan
gene-evm.TU.Chr14.526 rna-evm.model.Chr14.526 Chr14 17186674 17195183 uncharacterized protein nan nan
gene-evm.TU.Chr14.527 rna-evm.model.Chr14.527 Chr14 17205386 17225728 PREDICTED: FAD-dependent oxidoreductase domain-containing protein 1 GO:0016491;GO:0055114 K18166
gene-evm.TU.Chr14.528 rna-evm.model.Chr14.528 Chr14 17227194 17272295 uncharacterized protein GO:0005515 nan

For more detailed data, you can explore the Download section to access the full dataset.