CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.506 rna-evm.model.Chr14.506 Chr14 16501233 16504943 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr14.507 rna-evm.model.Chr14.507 Chr14 16507289 16521721 PREDICTED: exocyst complex component 1 nan nan
gene-evm.TU.Chr14.508 rna-evm.model.Chr14.508 Chr14 16522469 16546046 uncharacterized protein GO:0003700;GO:0006355 K19171
gene-evm.TU.Chr14.509 rna-evm.model.Chr14.509 Chr14 16561211 16573273 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr14.510 rna-evm.model.Chr14.510 Chr14 16591978 16609128 PREDICTED: SNARE-associated protein Snapin GO:0006886;GO:0031083 K20002
gene-evm.TU.Chr14.511 rna-evm.model.Chr14.511 Chr14 16620849 16621810 PREDICTED: Queuine tRNA-ribosyltransferase accessory subunit 2 GO:0006400;GO:0016763 K15407
gene-evm.TU.Chr14.512 rna-evm.model.Chr14.512 Chr14 16627243 16629123 PREDICTED: Queuine tRNA-ribosyltransferase accessory subunit 2 nan K15407
gene-evm.TU.Chr14.513 rna-evm.model.Chr14.513 Chr14 16633643 16688254 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0003676;GO:0004672;GO:0005524;GO:0006468;GO:0009190;GO:0016020;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr14.515 rna-evm.model.Chr14.515 Chr14 16768811 16769434 uncharacterized protein nan nan
gene-evm.TU.Chr14.516 rna-evm.model.Chr14.516 Chr14 16770489 16777976 PREDICTED: CUB and sushi domain-containing protein GO:0005576;GO:0006030;GO:0008061 K23489

For more detailed data, you can explore the Download section to access the full dataset.