CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.475 rna-evm.model.Chr14.475 Chr14 15456766 15462594 PREDICTED: Putative protein FAM47C nan K02410
gene-evm.TU.Chr14.477 rna-evm.model.Chr14.477 Chr14 15560350 15563335 PREDICTED: tripartite motif-containing protein 71 [EC:2.3.2.27] nan K10642
gene-evm.TU.Chr14.478 rna-evm.model.Chr14.478 Chr14 15633425 15644432 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr14.48 rna-evm.model.Chr14.48 Chr14 1647089 1684609 PREDICTED: Helicase SKI2W GO:0003676;GO:0005524 K12599
gene-evm.TU.Chr14.480 rna-evm.model.Chr14.480 Chr14 15699205 15714848 PREDICTED: Queuine tRNA-ribosyltransferase accessory subunit 2 GO:0006400;GO:0016763 K15407
gene-evm.TU.Chr14.481 rna-evm.model.Chr14.481 Chr14 15717408 15730925 PREDICTED: Negative elongation factor E GO:0003676;GO:0006355;GO:0032021 K15182
gene-evm.TU.Chr14.483 rna-evm.model.Chr14.483 Chr14 15803630 15813948 PREDICTED: Atrial natriuretic peptide receptor 2 GO:0004672;GO:0005524;GO:0006468 K12323
gene-evm.TU.Chr14.484 rna-evm.model.Chr14.484 Chr14 15816586 15821549 PREDICTED: Receptor-type guanylate cyclase gcy-28 GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr14.485 rna-evm.model.Chr14.485 Chr14 15826989 15827199 PREDICTED: Perlucin nan K17513
gene-evm.TU.Chr14.486 rna-evm.model.Chr14.486 Chr14 15892247 15892581 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.